Index

A

AmberMatcher (class in dabble.param)

AmberWriter (class in dabble.param)

C

CharmmMatcher (class in dabble.param)

CharmmWriter (class in dabble.param)

G

get_disulfide() (dabble.param.AmberMatcher method) (dabble.param.CharmmMatcher method) get_element() (dabble.param.MoleculeMatcher static method) get_extraresidue_atoms() (dabble.param.MoleculeMatcher method) get_linkage() (dabble.param.AmberMatcher method) get_lipid_head() (dabble.param.AmberMatcher method)

get_lipid_tails() (dabble.param.AmberMatcher method) get_names() (dabble.param.AmberMatcher method) (dabble.param.CharmmMatcher method) (dabble.param.MoleculeMatcher method) get_patches() (dabble.param.CharmmMatcher method) get_protein_segname() (dabble.param.CharmmMatcher method) get_unit() (dabble.param.AmberMatcher method)

K

known_pres (dabble.param.CharmmMatcher attribute) (dabble.param.MoleculeMatcher attribute)

known_res (dabble.param.AmberMatcher attribute) (dabble.param.CharmmMatcher attribute) (dabble.param.MoleculeMatcher attribute)

M

MoleculeMatcher (class in dabble.param)

N

nodenames (dabble.param.AmberMatcher attribute) (dabble.param.CharmmMatcher attribute) (dabble.param.MoleculeMatcher attribute)

P

parse_vmd_graph() (dabble.param.MoleculeMatcher static method) patches (dabble.param.CharmmMatcher attribute) (dabble.param.MoleculeMatcher attribute)

pseudoatoms (dabble.param.MoleculeMatcher attribute)

T

topologies (dabble.param.AmberMatcher attribute) (dabble.param.CharmmMatcher attribute) (dabble.param.MoleculeMatcher attribute)

W

write() (dabble.param.AmberWriter method) (dabble.param.CharmmWriter method)

write_dot() (dabble.param.MoleculeMatcher static method)